trRosetta
Last updated
Last updated
cd /home/pdiep/scratch/trrosetta/trDesign/02-GD
sbatch run.sh
look for conservative sites in a family (sequence-based)
structural prediction based on a family (structure based)
input sequence -> trRosetta -> predicted features (theta, phi, dist, omega)
loss: compared with target structure (LCC)
loss -> back prop -> PSSM (position specific scoring matrix)
PSSM (input) -> trRosetta